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Advanced Courses on Life Sciences

Live Online Course – 4th edition

Introduction to Photogrammetry

 February 24th and 26th & March 4th, 5th, and 7th, 2025

Course Introduction to Photogrammetry and Laser Scan

Course Overview

The goal of this course is to explain how you can obtain surface 3D digital models using structure from motion (SfM) photogrammetry. This technique offers the possibility to obtain 3D models of the external morphology of the samples, including colour and texture, of a wide size range of specimens with medium-low cost and fast approaches.

By the end of this course, participants should be able to obtain high-quality 3D models with the most commonly used surface digitisation technique. They will also be able to edit and manipulate the digital models to prepare them for use in typical analytical software and 3D printing.

Places are limited to 18 participants.

Programme

Data acquisition (small to large specimens)

Basics of the Structure from Motion (SfM) method: what data does it require?

  •  Photography for SfM:
    • Camera settings
    • Specimen preparation & support materials
    • Image capture methods with static or moving camera
    • Scale bar usage
  • Difficult cases: tiny, shiny, or otherwise problematic cases.

Model creation

  • Basic workflow in Reality Capture (and Meshroom)
    • Data loading
    • Marker detection
    • Alignment and model creation
    • Colors and textures
  •  Solutions for problematic cases
    • Multi-chunk modelling
    • Adding new photographs

 Basics of model editing for printing, web display, scientific use, etc.

  • Introduction to the interface and basics of GOM inspect, MeshLab and Blender.
  • Mesh description, quality assessment and elimination of errors (e.g. holes, non-watertight meshes, non-manifold vertices and edges, etc).
  • Scaling and mirroring.
  • Sectioning for 3D printing

 Long term data storage and scientific reusability considerations

  • Data integrity and long-term reusability: what and how to archive?
  • Digital repositories and licenses.

Ethical concerns and best practices.

Intended Audience & Assumed background

This course is addressed to researchers and technicians who work with complex structures and need to digitise their samples for different reasons, such as digital preservation, mass digitisation of collections, 3D printing and research questions (e.g. for geometric morphometrics, biomechanics analyses, etc).

No specific background is required.

Equipment

For the equipment, below we are listing the ideal setting you should have for your research, and the minimum you will need to do the practice, in case you do not have access to the ideal one:

IDEAL: DSLR or mirrorless camera with a wide-angle lens with short minimum distance, matching LED light ring (best: SL-108).
OK: digital camera with LED light ring.
MINIMUM: good cell phone camera.

IDEAL: Dedicated photogrammetry scale bars.
OK: any other measure, e.g. labeled cm scale.

IDEAL: turntable, ethafoam or similar, 6 to 8 raw-wooden chopsticks
OK: styrofoam, 6 to 8 chopsticks

Dates & Schedule

Online live sessions on February 24th and 26th and March 4th, 5th, and 7th, 2025.

From 14:00 to 17:30 (Madrid time zone).

Total course hours: 30 (17.5 hours of online live lessons, plus 12.5 hours of participants working on their projects).

This course is equivalent to 1 ECTS (European Credit Transfer System). The recognition of ECTS by other institutions depends on each university or school.

Format

This course will be split evenly between practical sessions and lectures. Participants are expected to create a 3D model in the time between the first block and the second block of the live sessions, which will be discussed during the second block.

Live sessions will be recorded. However, attendance to the live sessions is required to obtain the course certificate.

Instructors

Veronica Diez Diaz instructor for Transmitting Science

Dr. Verónica Díez Díaz
Museum für Naturkunde
Germany

Heinrich Mallison instructor for Transmitting Science

Dr. Heinrich Mallison
Palaeo3D
Germany

Registration Fees

  • Course Fee
  • Early bird (until January 31st, 2024):
  • 486 €
    (388.8 € for Ambassador Institutions)
  • Regular (after January 31st, 2024):
  • 580 €
    (464 € for Ambassador Institutions)
  • Prices include VAT.
    After registration you will receive confirmation of your acceptance on the course.
    Payment is not required during registration. Check discounts here.

Registration

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Organiser

Logo Transmitting Science

Collaborators

Logo COBCYL
Logo COBCV
Logo COBEUSKADI
Logo COBGA

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